rs212599321 SNP Detail

Summary

• ID
  rs212599321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72021031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA AACTAGGAGA AGGGGGGGGG
  Y
  GCGAAGAAAG AGGAAGGGAG TAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322704858	CHEV_8_74092286	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212599321					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72021031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	972 bp proximal
Cpgi20549	CpG island 20549	1874 bp proximal
Nxnl1	nucleoredoxin-like 1	1786 bp upstream
Rr400934	regulatory region 400934	1876 bp upstream
Rr665115	regulatory region 665115	5 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	495 bp upstream
Tssr77870	transcription start site region 77870	479 bp upstream
Tssr77871	transcription start site region 77871	570 bp upstream
Tssr77872	transcription start site region 77872	1270 bp upstream
Tssr81733	transcription start site region 81733	1775 bp upstream
Tssr81734	transcription start site region 81734	1761 bp upstream
Tssr81735	transcription start site region 81735	1755 bp upstream
Tssr81736	transcription start site region 81736	1747 bp upstream
Tssr81737	transcription start site region 81737	1735 bp upstream
Tssr81738	transcription start site region 81738	1076 bp downstream