rs212604784 SNP Detail

Summary

• ID
  rs212604784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTATGGC ACAAGCCCCT
  CTAGGTGTGG TTGGGGGAAG CAAATGTTCA GCCTTAGTTT CTTCACCTGT CAAATGGAAC
  TACTGGAGAT TATTAGATGG GGGCCGTGAG TGCTGAGAGC CTGGCGTGTG GGGGCAGACT
  CTCACAGGGC GGGGCTGCTG TCCTTCTGTG TGAGTGTGTG TTGCTGGGCT CCGGAAGCTC
  R
  GGAGAGCTGC GTGAGTGCTT TTAAGCCATC CAGCCAGGGC TGGTCTCTGC TCTTACCACT
  TAGCAGGGAG TGGCTGGCTC TCCGATGGTA CCAGCAAACA AAAGGCTAAT GCCTGCCATT
  TATCAAGCAG TACAGAAACA ATGGTACCCA CCACTGTCCT AGGCCATATT CTGAAGTGCC
  TATCTCAGTC CCCACAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377432919	MGP_WTSI_9_45212303	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212604784					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377432919	MGP_WTSI_9_45212303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315518 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195107	regulatory region 195107	1083 bp proximal
Rr206351	regulatory region 206351	1282 bp proximal
Rr209195	regulatory region 209195	483 bp proximal
Tssr84783	transcription start site region 84783	1646 bp downstream
Tssr84784	transcription start site region 84784	1594 bp downstream
Tssr84785	transcription start site region 84785	1062 bp downstream
Tssr84786	transcription start site region 84786	1031 bp downstream
Tssr84787	transcription start site region 84787	1010 bp downstream
Tssr84788	transcription start site region 84788	979 bp downstream
Tssr84789	transcription start site region 84789	952 bp downstream
Tssr84790	transcription start site region 84790	1715 bp upstream
Tssr84791	transcription start site region 84791	1846 bp upstream
Tssr84792	transcription start site region 84792	1894 bp upstream