rs212609814 SNP Detail

Summary

• ID
  rs212609814
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169312701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGTTGT ACAGAGTTGT
  ATGTAGCATA AGCAGAGAGG AATAAGAAAA TTTAATTTGC TAATTAACAC ACTTGGGCTG
  TCTGCAGCTA CCCAGTCCAA GTGCAACAGG GCTTCTTTAA AGAATTAGAA AGTATAAGAA
  AATGACTTAT GGAAATGAAA GTTTATTTCC AAAGTTTATT TCGATATATC AATTGGAGTC
  K
  CCATAGACAT AGAATTTGGT AACTCACCTT CAATGCCTTC TCATTAAGAA GCTAGAGGGA
  AAAGCTTGGA GAGGCCAAGA GAGCAAAGTC TCTTCTGTAG AGGCAGCCAG ATGTTTCCTC
  TTCTGCCGAG TCCTGTCTAA TCTTAGCCAC CTGCTCACTC GTTACGAGGC ACAGGGACTC
  TTGCTTTCCC ATTGCCTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
ss352337980	MGP_WTSI_1_171415263	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
rs212609814					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352337980	MGP_WTSI_1_171415263	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169312701 () rs orientation: forward

Symbol	Name	Function Class
Gm53643	predicted gene, 53643	within coordinates
Gm71126	predicted gene, 71126	within coordinates
Rr422941	regulatory region 422941	134 bp proximal
Rr422942	regulatory region 422942	706 bp proximal