rs212617400 SNP Detail

Summary

• ID
  rs212617400
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGCATT TTTTGTTTTT
  CATACAAGGG TCAGAGTTCA CCAGGAGTGT AAACAAGAGG GTAGATTTAG TAGTCCACGC
  TATCGCCCAG GATGGAAATC GGAGCTCCTT CTCGGGCTCC TGGGGCTGAC CTGGGAAGCA
  CACCCCACTC CCGGAGAAGA ACTCACTCTC CTCTCAGCCA CGCCCCATAC CCTTCAGACG
  S
  GGATGGGGAT GGGGGGCTCT GTTCTGTGCC CTATCTGCTG CACAGCTGCC CCAGCTCAGA
  GAGCCTCCAG GGCGCTAAGT CAGAGGCTCA GCAGCAGTTC TGTTCTGCTC CAGCAGTATC
  CCTGACCCTG AGAGTGGCCT TCAGAGGCTG AGAGTCACAC AAATATCCAT CACTCGCCCA
  GCAAACCTTC ACCCCAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170090	CHEV_12_113913402	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212617400					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641625 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	359 bp upstream
Cpgi5173	CpG island 5173	282 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	239 bp upstream
Tssr115391	transcription start site region 115391	768 bp downstream
Tssr117877	transcription start site region 117877	1164 bp upstream
Tssr117878	transcription start site region 117878	1105 bp upstream
Tssr117879	transcription start site region 117879	916 bp upstream
Tssr117880	transcription start site region 117880	824 bp upstream
Tssr117881	transcription start site region 117881	806 bp upstream
Tssr117882	transcription start site region 117882	427 bp upstream
Tssr117883	transcription start site region 117883	377 bp upstream
Tssr117884	transcription start site region 117884	354 bp upstream