rs212624333 SNP Detail

Summary

• ID
  rs212624333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGTGAA CACCTTCTCC
  ATCCCAGGCC CACTCACACA AGAAAGAACA CAGGCTTTTG TAGGTTGCAA GTCCTGGTCT
  GGTTTATTTA TAAAGCAATA AATATTTGAA GCACAAACAA ACTGCACTTG TGTAAACAAA
  CTGTACAATG ACTGATGAGA GATGGGGAGG GGGCTCAGAG GATTCCAAGA AGCACAATAC
  R
  GTCATCCTGA ATATAAGGTA GGCTAAGAGA GAGACATCTC AGAAGCACTT GCGGTGGACA
  ATGGATGGGC CTGCCTCATC ATACTCTTGC TTGCTGATCC ACATTTGCTG GAAGGTGGAC
  AGAGAGGCCA GGATGGAGCC CCCAATCCAG ACAGAGTATT TACGCTCAGG GGGAGCAATA
  ATCTGCAGAG AGAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315506	MGP_WTSI_2_113873163	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212624333					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315506	MGP_WTSI_2_113873163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877908 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562815	regulatory region 562815	1717 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	135 bp downstream
Tssr601	transcription start site region 601	145 bp downstream
Tssr19429	transcription start site region 19429	130 bp downstream
Tssr19430	transcription start site region 19430	20 bp downstream
Tssr19431	transcription start site region 19431	32 bp upstream
Tssr19432	transcription start site region 19432	128 bp upstream
Tssr19433	transcription start site region 19433	694 bp upstream
Tssr19434	transcription start site region 19434	747 bp upstream
Tssr19435	transcription start site region 19435	1742 bp upstream
Tssr25660	transcription start site region 25660	109 bp upstream
Tssr25661	transcription start site region 25661	88 bp upstream
Tssr25662	transcription start site region 25662	within coordinates
Tssr25663	transcription start site region 25663	21 bp downstream
Tssr25664	transcription start site region 25664	51 bp downstream
Tssr25665	transcription start site region 25665	159 bp downstream
Tssr25666	transcription start site region 25666	726 bp downstream
Tssr25667	transcription start site region 25667	753 bp downstream
Tssr25668	transcription start site region 25668	789 bp downstream
Tssr25669	transcription start site region 25669	818 bp downstream
Tssr25670	transcription start site region 25670	1774 bp downstream
Tssr25671	transcription start site region 25671	1817 bp downstream
Tssr25672	transcription start site region 25672	1886 bp downstream
Tssr25673	transcription start site region 25673	1921 bp downstream