rs212627992 SNP Detail

Summary

• ID
  rs212627992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGAGGCAG ACAAACACTC AGCGCATGCC
  GAGCAGTAAA CCCGCTCGCT GCGGCCCCGG GCTCCCCCCT CCGCAACCGG GGAGCACACC
  TGGCCCCGCC GAGGGCGTGG TACTGAGGCT GCGGTCCAGA GATCCTTCTG GAATGTGCCA
  Y
  ATCCCCTCCC TCCACCCGCA CCCCGCTACA CACAGCCGTT CTCTCCCGGG GTGGTCCTGG
  GCAGAACTCA GGTTGTAGAT ATCAGCCACC CCTTCCTCAA AACCGGAGGG GGCGAGGGAG
  TCTCAAGGGC ACAGACATCC ATTCCAGTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071236	CHEV_1_155033445	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212627992					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	within coordinates
Lamc2	laminin, gamma 2	within coordinates
Rr13130	regulatory region 13130	940 bp proximal
Rr25076	regulatory region 25076	1931 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	259 bp upstream
Tssr14251	transcription start site region 14251	223 bp upstream
Tssr14252	transcription start site region 14252	193 bp upstream
Tssr14253	transcription start site region 14253	179 bp upstream
Tssr14254	transcription start site region 14254	160 bp upstream