rs212633302 SNP Detail

Summary

• ID
  rs212633302
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60234679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAGTTC TAATACAAAT
  TTCCTTATTT TCACTTACTG GACACACTCT TTTGGGGGAA AAGTCGGAAG AGAAATCCTG
  CTTGCATCGA TCAAGTCAGC AGAAAGACTG CCCTGCCCCC ACTTGCCTAA GGCAAGAGAT
  CCTGTCCTTT TTGTTTGTTT GTTTGTTTTG TTTTTTCGAG ACAGGATTTC TCTGTGTAGC
  C
  CTGGCTGTCC TGGAACTCAC TCTGTAGACC AGACTGGCCT CGAACTCAGA AATCTGCCTG
  CTTCTGCCTC CCAAGTGCTG GGATCCTGTC CTTTAACTAA GAAACACCGG GTTCCTACCC
  AGCACTGACT TGTAGGATAA CTCTGGGCAG TCTATGCCTA CCTGGAGCTC AGCCTTGTCA
  CCTGTTGGGA GGGATGGTGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325366	CHEV_10_59861648	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212633302					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60234679 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	964 bp upstream
Rr215449	regulatory region 215449	479 bp distal
Rr223077	regulatory region 223077	49 bp distal
Rr228097	regulatory region 228097	123 bp proximal
Tssr93633	transcription start site region 93633	849 bp upstream
Tssr93634	transcription start site region 93634	902 bp upstream
Tssr93635	transcription start site region 93635	949 bp upstream
Tssr93636	transcription start site region 93636	1853 bp upstream