rs212656536 SNP Detail

Summary

• ID
  rs212656536
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137640179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTCAC AGCCCCAGGC
  CCTCAGCCCA TCTGAGCCAG GAAGAAAGCA GCTGCCGCCT TCCAGGCACC TGGCTACTGA
  GCCGACTGCA GAAGCCCCAG GTAGGCACCA GGTCGGCACC AGGTCGTGCT GTTTTTACCC
  ACAAGGCCCC AGAGAGTCCG AGCCTGTTCT AATCTCGTCT CTCTCGTTCA CAGTACGTCT
  W
  TCTCCCCGGG TGACCTCCCA GGTCACCCCC TCAAGGATGT CTCCACTGCC ACTTCGGGAT
  CCCAGCCACC AGGCTAATGC AGGACCTCGG CTGGTGGTGA GCTGGGGGGT TTGTGACTGT
  GTCTCCAGGT AGCAGGGGTG CCAAGAGAGG TGGAACTCTG ACTTCCTGTT CTCCACAGGA
  GCCCAGCTGT GGGCCAGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366882166	MGP_WTSI_5_138083145	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212656536					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366882166	MGP_WTSI_5_138083145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137640179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	426 bp distal
Gm20605	predicted gene 20605	within coordinates
Irs3	insulin receptor substrate 3	1115 bp downstream
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	818 bp downstream
Rr622927	regulatory region 622927	470 bp distal
Rr622928	regulatory region 622928	665 bp distal
Rr622929	regulatory region 622929	454 bp distal
Rr622930	regulatory region 622930	325 bp distal
Sap25	sin3 associated polypeptide	within coordinates
Tssr49364	transcription start site region 49364	582 bp downstream