rs212659269 SNP Detail

Summary

• ID
  rs212659269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36555498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGGAGC CTGTAGCCAG
  CCCTCCTCCT CTACCACCAC CACCACCACC ACCACACCCA CACACACACA GTCCAATGTC
  TTTCAGAGTA ACACAATCCA AGCTCACCTG TTCATCCCAG CGGTGCAGCT GGCTGTAGCG
  TACTTTGCAG AAGAGGAACC CGTCCAGGTA CACGGAGTAC AACTGAAAGC ACAGACACCC
  R
  CCTGTTATCC TAGGCGAGGA TGAGGACTGG GGTAGGAGGT GCCCAGGGTC ACCGAGCCCC
  TCCCCACCCA ACCGACCCCG GGCCCCAGAC GCACCACGTA GCGGCCCCCC AGCGCGTCTG
  GCCGCTGCTG GGACACCGGG ATGCAGAAGT GCATCTTCAT GGCTCTGGCG ATGACCAGGG
  ACAGCGTGGA GAACAGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923061	CHEV_15_36485108	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212659269					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36555498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7030	CpG island 7030	within coordinates
Rr311658	regulatory region 311658	within coordinates
Snx31	sorting nexin 31	within coordinates
Tssr134019	transcription start site region 134019	5 bp upstream
Tssr134020	transcription start site region 134020	183 bp downstream
Tssr134021	transcription start site region 134021	203 bp downstream
Tssr134022	transcription start site region 134022	233 bp downstream