TTGAGGCCAG CCTGATCTAC AGAGTGAGTT CCAAGACAGC CAGAGCTACG TAATAGAGAG ACCCTGTCTC AAAATAAAAC AAAAACAAAA GAGTATTATT ACCTGACCTC GCAAGCAATG GTTAAAGGGC ATGCTGGTTC ACACAGCACT GATCTTTGAA CCATTGACCT TGCCTCAGTC TGGTAAATGG GAGTACAAGA Y CTCACTGTAG CTCTCACGAA CACAATCCAA AGTCAGGAAG GACATAGTCA AACACAGAAA ACTTTCAAAC ATATTCTGCC ATTCACATTC ATGATCCTCT GACGGAGCTC ACAGCTGCAA GACCAAGATC ATCTTGCCAG GCTCGTGGGT AAGGAAGGTG AGTTTGGGTG ATGGAAGGAG ATGGGTGACA TTGCTGTCCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss389656824 | MGP_WTSI_13_99463872 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs212662636 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss389656824 | MGP_WTSI_13_99463872 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr13:98830425 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi6012 | CpG island 6012 | 781 bp proximal | ||||||
Rr281821 | regulatory region 281821 | within coordinates | ||||||
Tmem171 | transmembrane protein 171 | within coordinates | ||||||
Tssr120815 | transcription start site region 120815 | 1595 bp downstream | ||||||
Tssr123632 | transcription start site region 123632 | 1732 bp upstream | ||||||
Tssr123633 | transcription start site region 123633 | 1700 bp upstream | ||||||
Tssr123634 | transcription start site region 123634 | 1192 bp upstream | ||||||
Tssr123635 | transcription start site region 123635 | 1183 bp upstream | ||||||
Tssr123636 | transcription start site region 123636 | 1130 bp upstream | ||||||
Tssr123637 | transcription start site region 123637 | 1110 bp upstream | ||||||
Tssr123638 | transcription start site region 123638 | 772 bp upstream | ||||||
Tssr123639 | transcription start site region 123639 | 852 bp downstream | ||||||
Tssr123640 | transcription start site region 123640 | 889 bp downstream | ||||||
Tssr123641 | transcription start site region 123641 | 908 bp downstream | ||||||
Tssr123642 | transcription start site region 123642 | 976 bp downstream | ||||||
Tssr123643 | transcription start site region 123643 | 1107 bp downstream | ||||||
Tssr123644 | transcription start site region 123644 | 1643 bp downstream | ||||||
Tssr123645 | transcription start site region 123645 | 1767 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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