rs212665067 SNP Detail

Summary

• ID
  rs212665067
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACCCAG CAACCCTTCC
  ACTCTGAGGT CAAAACTCTT CTAATCCAAA CCCCGATCCC ATTCATAGGA AACTGAGGCC
  TAGAAAAGTC CCAGTTAGTT AAAGGCAAAG TAAAGACTTG AACCCACCAT TGCCTTTCGA
  TTTGAATGAT AAGTACTGGC ATTCCACGGG GGGGGGGGGG GGGGGGGGGC AGGGAGGGGG
  G
  TACAGAGGGA GGAGCTAAAA ATTCTATGTC AAAGACGTGC TTACTTTAAA AATGGCAGCC
  ATACAATCTG TCTCTTCTTT TGGAAATATT AATATGACAG ATTTTCATCT TGCTGTTGCT
  ACATGACGAA CACGGGACCT AATCTGCCGG GTGTTTTCTA GGCCAGAGTG GAGGAAGGGT
  CTGGGTTCAG GTGGAGCTAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358949074	MGP_WTSI_3_97691670	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212665067					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358949074	MGP_WTSI_3_97691670	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	428 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	950 bp proximal
Tssr34685	transcription start site region 34685	881 bp downstream
Tssr34686	transcription start site region 34686	939 bp downstream
Tssr34687	transcription start site region 34687	1080 bp downstream
Tssr34688	transcription start site region 34688	1164 bp downstream