rs212665352 SNP Detail

Summary

• ID
  rs212665352
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92493122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCTGAT GGCCAGCTGT
  GCTGCTCTTT CTACGATGAC TCCTCAGTTC TTAGAGGGCA CACTGTGAGC AATCTCAGCA
  CAGCAAGATT TGTTACACAT CAGCTGCACC TCCAGCTCCT TGCCATTGTG GACCAGAAAG
  TTCTAGAGCC GCTAGGCAGC ATGTGCTTGG CTTTCTTGTT GTTCCTGTAA CCAATGTTGG
  K
  CATCAGGATC TGGCCCTTGA ATCTTCTCTG TACCCCGCTG TCAGTGCCTC TGGGTTTCCA
  GTTTCCCTTA ATTTTCACGT ATCAGTCTGA CTGGTGTCTG ATGAACTTCT TGGTCCTCTT
  TTTGATGATC TTGGGCTTCA CCAGAGGCCG GCGAACAGCC ATGATGCAGC AAAACAGATG
  GCAGCCACCT TGTAGGCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389492751	MGP_WTSI_13_93126569	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212665352					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389492751	MGP_WTSI_13_93126569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92493122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	947 bp distal
Dhfr	dihydrofolate reductase	Intron
Gm19308	predicted gene, 19308	within coordinates
Msh3	mutS homolog 3	1607 bp upstream
Rr403896	regulatory region 403896	1813 bp downstream
Rr483661	regulatory region 483661	1878 bp distal
Rr483663	regulatory region 483663	1926 bp distal
Rr483664	regulatory region 483664	1121 bp distal
Rr483665	regulatory region 483665	1216 bp proximal
Tssr120622	transcription start site region 120622	1848 bp downstream
Tssr120623	transcription start site region 120623	1438 bp downstream
Tssr120624	transcription start site region 120624	1404 bp downstream
Tssr120625	transcription start site region 120625	1397 bp downstream
Tssr120626	transcription start site region 120626	1366 bp downstream
Tssr123430	transcription start site region 123430	1589 bp upstream