rs212672676 SNP Detail

Summary

• ID
  rs212672676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTGGTGG ACGGAGAGAA CTGACTTTTA AATCCACACA
  TGAGCTACGT TTCGTGCATG TGCACACACA CACACACACA CACACACACA CACACACACA
  Y
  ATATATACTC TCTCAGTAAA ACAATAATTT TTTTAAGAAA GTAGATATAT ACATTAGTGA
  TACCTTGGTA TCAGATCTGC ATATTCTACA CAGTAGTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320487213	CHEV_2_121975437	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212672676					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980182 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	1457 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr397252	regulatory region 397252	1972 bp downstream
Tssr19806	transcription start site region 19806	1973 bp downstream
Tssr19807	transcription start site region 19807	517 bp downstream
Tssr19808	transcription start site region 19808	443 bp downstream
Tssr19809	transcription start site region 19809	127 bp downstream
Tssr19810	transcription start site region 19810	861 bp upstream
Tssr19811	transcription start site region 19811	1174 bp upstream
Tssr19812	transcription start site region 19812	1209 bp upstream
Tssr19813	transcription start site region 19813	1233 bp upstream
Tssr19814	transcription start site region 19814	1256 bp upstream
Tssr19815	transcription start site region 19815	1272 bp upstream
Tssr19816	transcription start site region 19816	1288 bp upstream
Tssr19817	transcription start site region 19817	1311 bp upstream
Tssr19818	transcription start site region 19818	1334 bp upstream
Tssr19819	transcription start site region 19819	1391 bp upstream
Tssr25955	transcription start site region 25955	1209 bp downstream
Tssr25956	transcription start site region 25956	1286 bp downstream
Tssr25957	transcription start site region 25957	1404 bp downstream