rs212678248 SNP Detail

Summary

• ID
  rs212678248
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24299177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGTGGA TATGTATGCA
  TGTTTGAAAC ATACATATGC TAAACCGAGA TTTAGCAGAA ATTAACAGCC ACACAAGAGT
  CCAACTTGTC TGATTGTACA GAGGAGAACA CTTAGCATGG GTAGATATGA CATGGCCAGG
  ATTGATGCTT CCCAGCGTGG GCATGACTGG GTTTTTGGAC CTCATTAAAC ACTTATCCTA
  W
  CCAGAAGAAA AGTTAAATCT GTCCACTGTG TGTGACACTT TGCTCATGTA GAACTTCCAT
  TTCATTTGGA TGCCTTTGGA GCTGGAAGAC TAGCTGCCTG GCCTCACCAG GTCAATGGTG
  CCTGGCAGTC CACCCCTGGG CATTGTCTAC CTGGAGAGTG AGCAGTTAGA GATGGGATTG
  TTGGGCTGCA GTTCTAAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353385503	MGP_WTSI_2_24264685	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A	A	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	A	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212678248					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A	A	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353385503	MGP_WTSI_2_24264685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24299177 () rs orientation: forward

Symbol	Name	Function Class
Psd4	pleckstrin and Sec7 domain containing 4	mRNA-UTR
Rr552869	regulatory region 552869	474 bp distal
Rr552870	regulatory region 552870	within coordinates
Rr552871	regulatory region 552871	201 bp proximal
Rr552872	regulatory region 552872	327 bp proximal