rs212697990 SNP Detail

Summary

• ID
  rs212697990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162502707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTGGGG GGGAAGCGGC
  AGGAAAGTAA GGCGACGAGG GGCCAGGGGG GGACCTGGAG CGGGACTGGG CACGCCTGGA
  CACAGCAGCT GCGTCCGGAG GTTGGGACGG GACTCCCACC GGGCCCCGGC ATCCCCTGGC
  CACGGGACCC AACTTTCTCC TCCCAGGGCT GGGGAGAGCG AAGGGGCCCG GGGAGCCCGG
  Y
  GGGCGCACTC ACCTGCGGCG CTCTGCGCTC CGGCGCCGGG CAACGGCGGC CGCTGCAGCC
  CCAGGAGCAG GAGCCGGAGC AGGCAGAGGG CGAGCCCGCC AAGGCTCCCC ATCCGGGCGG
  CAAGCGGCTC AGCCCCTTCC CGAGGGCGCC GGGGCCGGGA CTCGGGCGGG CGCGGGGCGG
  CCCCGCATCG CCAGCGCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356387059	MGP_WTSI_2_162486523	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212697990					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356387059	MGP_WTSI_2_162486523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162502707 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	376 bp upstream
Cpgi12617	CpG island 12617	within coordinates
Ptprt	protein tyrosine phosphatase receptor type T	within coordinates
Tssr21417	transcription start site region 21417	405 bp upstream
Tssr21418	transcription start site region 21418	457 bp upstream
Tssr21419	transcription start site region 21419	517 bp upstream
Tssr27272	transcription start site region 27272	262 bp downstream
Tssr27273	transcription start site region 27273	288 bp downstream