rs212700120 SNP Detail

Summary

• ID
  rs212700120
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106339517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCCATA GCCTGAGACA
  CCCCCTTCCC AGACTGCCCC CTCTAACCTC TGACCCCGTT GTCTGGCCCA GGTCACCAAG
  CTCCAGCAGC TCTCAGGCCA CGCCGTTCCC TTTGCATCAC CCAGTGTGGT GCCAGGTAAG
  CAGTTTCGGC TGAAGGAGAC AGCCAGCAGC CCGGCATCCC TTGCAGTGGA TGGGGAGGCC
  W
  GTAGAGCCCT CAAACCACAC TCAGTCCTTC TCCCCTGCCT CAGGACTGGA TCCCAGCACA
  CAGACCAGCT CACAGGAGTT TCTGGTTCCC AATGATGTGA GCAGAAGCTG GGGGGCTGGG
  GGGGGAGGGG CGGTAAGGGG ATCCAGGGGT CTAACCCTTG CTCAAGGTTA AATTCTGCCT
  CTCTTCTAGC TGATTGGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378830291	MGP_WTSI_9_106364649	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212700120					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378830291	MGP_WTSI_9_106364649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106339517 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22267	CpG island 22267			168 bp proximal
Gpr62	G protein-coupled receptor 62			1644 bp downstream
Pcbp4	poly(rC) binding protein 4			Intron
				Noncoding-Transcript-Variant
Tssr86911	transcription start site region 86911			1672 bp downstream
Tssr86912	transcription start site region 86912			1661 bp downstream
Tssr86913	transcription start site region 86913			1620 bp downstream
Tssr86914	transcription start site region 86914			423 bp downstream
Tssr86915	transcription start site region 86915			835 bp upstream
Tssr86916	transcription start site region 86916			939 bp upstream
Tssr86917	transcription start site region 86917			1062 bp upstream
Tssr86918	transcription start site region 86918			1195 bp upstream
Tssr86919	transcription start site region 86919			1465 bp upstream