rs212701857 SNP Detail

Summary

• ID
  rs212701857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30208499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTCCAC TCTGAGTCTA
  CCTCACCTGC ATCCCAGACG CCTGGCCATC TTTGTTCTCC TACCTTCCTA CAAACATAAC
  TTTTAGCTGC TTGACTGTCT TAGAGGAGGG AACAGCTGTG TTCAGCTCCT GTTCCCATAC
  TTGGGCACCG TCCACCAGAG GCATGGAGCA TCCTGCCTCT TGGTCCGCAG CAGAGAGTAG
  S
  ACCTCATTTG GGTCGGTAAT GTGCCCCAGA TACGTGGCCC TAATACACTT CAATGGGAAC
  AGTAAGGATG CTGATCCTGC TTTCCAACCG CAGTGGTGAA GGGCTGGATG GCAACCACGA
  AATTCTTTTT ACCAGGTAAT GTGGACATCA CAGTAAATGA CGATGAGCCA CAGCTGTGGC
  TTCCCAGCTC CTGCTCCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325129942	CHEV_16_30389767	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212701857					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30208499 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	825 bp upstream
Cpgi8159	CpG island 8159	154 bp distal
Gm61087	predicted gene, 61087	within coordinates
Gm61089	predicted gene, 61089	within coordinates
Rr370076	regulatory region 370076	151 bp downstream
Rr514223	regulatory region 514223	1162 bp distal
Rr514224	regulatory region 514224	792 bp distal
Rr514225	regulatory region 514225	783 bp distal
Rr514226	regulatory region 514226	within coordinates
Rr514227	regulatory region 514227	17 bp proximal
Tssr140714	transcription start site region 140714	980 bp upstream
Tssr140715	transcription start site region 140715	879 bp upstream
Tssr140716	transcription start site region 140716	823 bp upstream
Tssr140717	transcription start site region 140717	333 bp upstream