rs212702241 SNP Detail

Summary

• ID
  rs212702241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAGGGT AATGGCGACG
  CCTCCCCAGA TGGCAGAAGA CGGGTACATC GGTGCCACTT TAATGGCTGC AGGAAAGTTT
  ACACGAAAAG CTCCCACTTG AAAGCACATC AGCGCACTCA CACAGGTCAG TCCCCTCTTG
  GGGCCTGGGT GGTCAGCTGC TGGTGGGCGC CCTCAGTCGA TCAGCACTGG GAGGGAGCCA
  S
  GACCCCCCCA GGATGCGGTC ACAAGCAAGA CAGTCCTCAC TTCCTAGATT CTTGTCTCTA
  AGGAATTGGG TCTTTTTTGG AGTTCAGAGT AGAATCTTAA AAGACTGGAC ATTTGAATCA
  GATGAATGGT TCATGCTTTC AGATTAAACA GGAGGCCAGA TCACATTCTC CATGGATACC
  CAAACCTTCA CCCACTGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224096	CHEV_13_5864666	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212702241					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915419 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	579 bp downstream
Tssr118246	transcription start site region 118246	1594 bp downstream
Tssr118247	transcription start site region 118247	1524 bp downstream
Tssr118248	transcription start site region 118248	923 bp downstream
Tssr118249	transcription start site region 118249	718 bp downstream
Tssr118250	transcription start site region 118250	652 bp downstream
Tssr118251	transcription start site region 118251	617 bp downstream
Tssr118252	transcription start site region 118252	559 bp downstream
Tssr118253	transcription start site region 118253	990 bp upstream
Tssr118254	transcription start site region 118254	1017 bp upstream
Tssr121319	transcription start site region 121319	1106 bp upstream
Tssr121320	transcription start site region 121320	1069 bp upstream
Tssr121321	transcription start site region 121321	1058 bp upstream
Tssr121322	transcription start site region 121322	1017 bp upstream