rs212704921 SNP Detail

Summary

• ID
  rs212704921
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102491193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTTTGG TTTTAAAGGC
  TTTCATCTTA GAATGGGTAT AAAGGTATTT CAGGCTATCT ACAGGACCCT TCCTGAATTA
  TTTCTGCCTT TAGAGTCTCA GTTGGAAAAC ATCTTTGAAA AATATTGTCT TCCAAATGCT
  GCAACCAACT TATTGTCGAT TCTGGTGGCC AGAGGGGAAA AGAGAGGACA ACAAACACCC
  M
  CAAACTCCAT CCATGGCTGC CAAATGGTTT GACATTCAGA GTAAAGCAGG TGCGATTTTC
  AGGACTGAAA CCATTACTAG TCCAGCTAGT GCCACCTTTG TGCATTGTGC AAGGTTAGGA
  AATGATTGTC AAAGGAACTT GTATTTAAGA GATGAAAGAA TTGGAAAAAA AAATCTAAAA
  ACCGGAAACA AATGTAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439914	CHEV_2_102501005	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212704921					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102491193 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11978	CpG island 11978			1093 bp distal
Gm57687	predicted gene, 57687			within coordinates
Rr561715	regulatory region 561715			1557 bp distal
Rr561716	regulatory region 561716			772 bp distal
Rr561717	regulatory region 561717			1449 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2			Intron
				Noncoding-Transcript-Variant
Tssr19106	transcription start site region 19106			1996 bp downstream
Tssr19107	transcription start site region 19107			1976 bp downstream
Tssr19108	transcription start site region 19108			1940 bp downstream
Tssr19109	transcription start site region 19109			1898 bp downstream
Tssr19110	transcription start site region 19110			1616 bp downstream