rs212707405 SNP Detail

Summary

• ID
  rs212707405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44143826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAGTTT TATGTATCCG
  TTTACTAGTT TGTGAACATT TGGCTTATTG TGAATCATAT TGCTACAGTG TTCAGATAAG
  ACAGTGGTGC TTTTGAGAGA GAAGCAGAGG GAGATTTTAA GAGATTAAGC TGAAGGCTAG
  GAAGATGGAG AGAGGGTTCT CAAGGCAAGA AATGTTAAGA ATGCCCCATT AGAAGAAGAA
  R
  AAAAAAAAGA GGCTAGGAAA CCCCCACCCC ATACATCAGA AGGATTCAGC CCTGCTAAAT
  GTCTTAATAT TAATTAACCC AGGGAAACAT TTCAGATTGT GACTTCTAGG ATTGTAACAA
  CACATTTTTA TTGTTTTAGA GGACTAAGTA TGTGATACTT ATAGGAATAG GATAGTAATA
  GGAAACTAAT ATAAAACCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ
ss349443683	MGP_WTSI_1_44161511	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ
rs212707405					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349443683	MGP_WTSI_1_44161511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44143826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi223	CpG island 223	1900 bp distal
Gm29247	predicted gene 29247	within coordinates
Poglut2	protein O-glucosyltransferase 2	Noncoding-Transcript-Variant
Rr410461	regulatory region 410461	1735 bp distal