rs212708888 SNP Detail

Summary

• ID
  rs212708888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144992546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG CAAAACCCTT CAGGCTGGGG
  R
  CTGGTGGAGA AGGATGGAGG GCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322067427	CHEV_6_144995340	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212708888					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144992546 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1293 bp proximal
Gm15687	predicted gene 15687	717 bp upstream
Gm26666	predicted gene, 26666	739 bp upstream
Rr145931	regulatory region 145931	1145 bp distal
Rr145932	regulatory region 145932	within coordinates
Tssr59519	transcription start site region 59519	1718 bp upstream
Tssr64030	transcription start site region 64030	685 bp downstream
Tssr64031	transcription start site region 64031	710 bp downstream
Tssr64032	transcription start site region 64032	785 bp downstream
Tssr64033	transcription start site region 64033	816 bp downstream
Tssr64034	transcription start site region 64034	844 bp downstream
Tssr64035	transcription start site region 64035	905 bp downstream
Tssr64036	transcription start site region 64036	1765 bp downstream
Tssr64037	transcription start site region 64037	1781 bp downstream
Tssr64038	transcription start site region 64038	1836 bp downstream
Tssr64039	transcription start site region 64039	1856 bp downstream
Tssr64040	transcription start site region 64040	1875 bp downstream
Tssr64041	transcription start site region 64041	1890 bp downstream
Tssr64042	transcription start site region 64042	1910 bp downstream
Tssr64043	transcription start site region 64043	1929 bp downstream
Tssr64044	transcription start site region 64044	1989 bp downstream