rs212709962 SNP Detail

Summary

• ID
  rs212709962
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77353028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAATATC TGTGCCAACA
  TCTTCCCCTT GAACCCAGTG CTGGGAGTTA GTTTACTTTT CTCTGCCTGG CTTAAGCTGT
  GGCTCATAGA ACCTTCTAAT AGGGATGAAA TGCCCATACC GGTGCCAAAG TTTTAAGTTC
  TCAAACAATC GCCATCGATG TTAATAACAG CGGTAGCCTC ATCAATTGCC CTGGGTCAAC
  S
  TAGACCCTCA TCAAGCTACT GAGACGATTC CCCCAGAGTA TCTTCTGAGG CCTCTTCGCG
  GCGGGTCGTG GCTGTTGGGG ACAACCCCGC CCGCTGGGAA CGACTAAATT AGCTGCGCGA
  TTGCGGCAGG AATGCGGCGC GCAGGCACCT GATCTCGCGC GGTGGCTCCC ATTCTCCGTG
  TCTCTCTTTG GACCAAGCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755232	CHEV_11_77275704	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212709962					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77353028 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	209 bp upstream
Cpgi3305	CpG island 3305	within coordinates
Rr247229	regulatory region 247229	within coordinates
Ssh2	slingshot protein phosphatase 2	1982 bp downstream
Tssr103136	transcription start site region 103136	123 bp upstream
Tssr103137	transcription start site region 103137	224 bp upstream
Tssr103138	transcription start site region 103138	356 bp upstream
Tssr103139	transcription start site region 103139	365 bp upstream
Tssr103140	transcription start site region 103140	403 bp upstream