rs212714568 SNP Detail

Summary

• ID
  rs212714568
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12744976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCGAAAG AAAAGGGGCG
  CCGCTCCCCG AGGTGGCCCG ATCGGCTGAG GAGCCCAGGG CTCCTCCTCG GCCCTGGGCG
  GGAGAAATCC CGCGCCCGGC GCTGCCCGCT CCCCTCCTCG GGGGAAGGGC GACTCCACAA
  CTTTGTGCGC GAGAGCTGCT CGCCGCTCCG GCTCCTCCTC CAGGTCCTCC TCCGGCTGCC
  A
  CCGGCCCCTT TGTTGGAGAG CGAGGGTGGG GCGCTGCTGG GTCCGCCCGC CACCCCGGGT
  AGGGGCTCGC GTCTCCCAGC ACGAATCGCC CAGCCTCGGA GCCGTGGATC CCGCAGGTCG
  GACCCGCCGT CTCGCCGCTC GCGCGCCCCG GGGCCCCAGG CCGGGCAACT TTGTTCTCCC
  GGGGAGACCA GTCCCCCTCG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323253699	CHEV_10_12589030	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212714568					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12744976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	1503 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	210 bp downstream
Tssr92368	transcription start site region 92368	800 bp downstream
Tssr92369	transcription start site region 92369	251 bp downstream
Tssr96723	transcription start site region 96723	1045 bp upstream
Tssr96724	transcription start site region 96724	1005 bp upstream
Tssr96725	transcription start site region 96725	928 bp upstream
Tssr96726	transcription start site region 96726	95 bp upstream
Tssr96727	transcription start site region 96727	10 bp upstream
Tssr96728	transcription start site region 96728	257 bp downstream
Tssr96729	transcription start site region 96729	398 bp downstream
Utrn	utrophin	within coordinates