rs212729168 SNP Detail

Summary

• ID
  rs212729168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125870600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGCTCT GGGGATCCTG
  TCTGCCTCCT AAATGCTGGG ATTCTAGGCT GCTACACCTG CCCAGCCATA GCTGAGTCCT
  GGGGGCCTGA ACCCTGGTCT TTAGCAGCAT CTCGCTTGGT TCCCCTTCTC CCCTCCCGTA
  CTTATTTATT TATTCAGAGA CTGGGTCTTT CACTGGAACT CACGGATCAG ATCAGGCTGG
  Y
  CCCTGGGATC CACCTGTTTC TGCCTTCCCA GGGCTGGAAC TACAGGTGTC ATGGCACTGG
  AGGAACTCAA GTCCCTCATG CTTGCCTGGC AAGCACTTTA CTTAATAAGC CGTCTTCCCA
  GCTCCACCTA AGGCTACCTG AGTTTGCAAT AACCAGCTCT AAAAGTTCTA CCAGCAGCTG
  GAGTGGTTGG AAGAGGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322450383	CHEV_7_133414942	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212729168					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125870600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	289 bp proximal
Rr368426	regulatory region 368426	320 bp upstream
Rr381444	regulatory region 381444	378 bp downstream
Rr655453	regulatory region 655453	701 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	985 bp upstream
Tssr69003	transcription start site region 69003	1000 bp upstream
Tssr69004	transcription start site region 69004	1016 bp upstream
Tssr69005	transcription start site region 69005	1035 bp upstream
Tssr69006	transcription start site region 69006	1047 bp upstream
Tssr69007	transcription start site region 69007	1078 bp upstream
Tssr69008	transcription start site region 69008	1098 bp upstream
Tssr69009	transcription start site region 69009	1161 bp upstream
Tssr69010	transcription start site region 69010	1356 bp upstream
Tssr69011	transcription start site region 69011	1419 bp upstream