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rs212747709 SNP Detail
Summary
  • ID
    rs212747709
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:89096781 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCCTTTTCT CCCTTCTCTC
    TTTGGAGTAT TCTGTTATTG TTAAAGTAGT GTTGGGATTT ATTAAAGATG TTTGAAATGG
    ACTGGAGAGA TGGCTCAGTG GTTAAGAGCA GTGACTGCTC TTCCAGAGGT CCTGAGTTCA
    ATTTCCAGCA ACCACATGGT GGCTCACAAC CATCTGTAAT GAGATCCGAT GCCCTCTTCT
    K
    GTGTGTCTGA AGACAGCTAC AGTGTACTTA CATAAATTGT CTTCACCTCC TCCCTACCTT
    CTCCTCTTCC TTGTTTTGTC TTGTTTTCCT CCCTGAGACA GGTTTTCTCT ACAGAACCCT
    GGATGTCTTG GAACTCACTC TAGACTAGGC TATCCTAGAA CTCACAAGAA ATCTGGCTGC
    CTCTGCCTCC CAAGAGCTGG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358808233 MGP_WTSI_3_88993396 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T G T T T T G G T T T T T T T T T T T G T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212747709 SNP T T T T T T T T T T T T T T T T T T T T T T G T T T T G G T T T T T T T T T T T G T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss358808233 MGP_WTSI_3_88993396 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:89096781 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13408 CpG island 13408 1867 bp distal
Entrep3 endosomal transmembrane epsin interactor 3 179 bp downstream
Rr367465 regulatory region 367465 1030 bp upstream
Rr579970 regulatory region 579970 483 bp distal
Rr579971 regulatory region 579971 888 bp proximal
Tssr30056 transcription start site region 30056 1986 bp downstream
Tssr30057 transcription start site region 30057 1644 bp downstream
Tssr30058 transcription start site region 30058 1578 bp downstream
Tssr30059 transcription start site region 30059 1509 bp downstream
Tssr30060 transcription start site region 30060 1477 bp downstream
Tssr30061 transcription start site region 30061 1146 bp downstream
Tssr30062 transcription start site region 30062 1108 bp downstream
Tssr30063 transcription start site region 30063 1064 bp downstream
Tssr34094 transcription start site region 34094 837 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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