rs212768853 SNP Detail

Summary

• ID
  rs212768853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83879582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCTCGG CGGCGGGGCC
  GCGCGCCCGC CGCTCTCAGG ACGGCCTCCC TTCTCCTCCC TGGGCCTCAT TTACATACTG
  GGGGTCGTCG AATATTTTAC AGAGCGCCAC CCCCTCCTCG GCCTGGGTCG CACACGCGCG
  CAGGCTACAA CTACAGCCCC GGGCTCCTCC AGCTCCGGGC GCGCAAACAG GCCCGAGGGA
  R
  CAGCCAGCCC TCCTCGGGAC AGATTCCTGC ACCGCCGCCC CCTCCCCCTC CGCGCCCGCA
  CCCCTGACAG CCTCCTGCTG GTGTTGCAGG ATACCCACCT TCTCTCAAAG CCCCCACCTT
  CCTCTACACA CTTCGGCCCC TCCTCCCACA TCTTAGCCTT TTTGGCACAC ACACACACAC
  ACACACACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389280626	MGP_WTSI_13_83871068	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212768853					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389280626	MGP_WTSI_13_83871068	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83879582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5906	CpG island 5906	1483 bp distal
Cpgi5907	CpG island 5907	within coordinates
Cpgi5908	CpG island 5908	1263 bp proximal
Gm55122	predicted gene, 55122	within coordinates
Mir9-2hg	Mir9-2 host gene	within coordinates
Rr483282	regulatory region 483282	1973 bp distal
Rr483283	regulatory region 483283	1869 bp distal
Rr483284	regulatory region 483284	1217 bp distal
Rr483285	regulatory region 483285	353 bp distal
Rr483286	regulatory region 483286	within coordinates
Rr483287	regulatory region 483287	258 bp proximal
Rr483288	regulatory region 483288	1002 bp proximal
Rr483289	regulatory region 483289	1205 bp proximal
Tssr120527	transcription start site region 120527	1995 bp downstream
Tssr120528	transcription start site region 120528	1969 bp downstream
Tssr120529	transcription start site region 120529	69 bp downstream
Tssr120530	transcription start site region 120530	904 bp upstream
Tssr120531	transcription start site region 120531	975 bp upstream
Tssr120532	transcription start site region 120532	1100 bp upstream
Tssr123339	transcription start site region 123339	1879 bp upstream
Tssr123340	transcription start site region 123340	1783 bp upstream
Tssr123341	transcription start site region 123341	1752 bp upstream