rs212770056 SNP Detail

Summary

• ID
  rs212770056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48716080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATCCCGG GCTCTGGACT
  GCCAGGATAT TCACAGCTCT CCCTCCAGCT GACCTATTTA GCTCACACTG GAACTTTGGG
  ACCTCAAGAT CCCATCACTC ACCCAGTTAA CTAATATAAG GCAGTTTTCA GTGATCTTCC
  ATGTGGAGAC AGGAACTAAG TTGATAGATA GGAAATAAAC ATAGCTAACA CCATCAATCC
  S
  CTGGGATGCC CAACAGCACT CACAGGTAGC TGTCACTTTT GAGTCATTTG TCTTTTAAAT
  GACAATACCA TATAACCTTC TTACACTCTT TCTTTTTTTT TTTTTAATGA AAATAAGCTT
  TATTACATCA AGTAATAAAT ACAAAGATGC AACAGTTTCA GTCGCTTTCT TCCAGATGTT
  GTGATGGGCT CACAGTAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664661	CHEV_11_48638755	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212770056					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48716080 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	93 bp downstream
Cpgi2781	CpG island 2781	514 bp distal
Cpgi2782	CpG island 2782	802 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	1452 bp downstream
Rr446122	regulatory region 446122	377 bp distal
Rr446123	regulatory region 446123	402 bp proximal
Rr446124	regulatory region 446124	1392 bp proximal
Trim7	tripartite motif-containing 7	885 bp upstream
Tssr107641	transcription start site region 107641	1048 bp downstream
Tssr107642	transcription start site region 107642	1471 bp downstream