rs212775885 SNP Detail

Summary

• ID
  rs212775885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56837091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACCTCTG ACTCCAAAAC
  TCATAAACTT TGACTCCCTA TGAAGGATAA CAGCTGGTCG TGATGACACA CACGGGAGAC
  TGAGTGAGTG CCAGGCCAGC CTGTGCCACA TCTAGCAAGA TCTTACCAAA AGTTAACCAA
  ACAAACCGGG AGCTGAAACA GCACTGTCAT GAATTGGAGG CTGGACTCCA GTCCCTTTCT
  Y
  AAACAAACAG ACAAACGAGT GGTGGTGGAC ACATTTAGTC CCAGAATTTG GGAGACAGAG
  GCAGGTGAAT CTCTCTGAGT TCTGGGCCAG CCAAAGATAC ATAGCAAGAC TGTCTCAAAT
  TAAAAATTGA AAGATCTTGA GCATGCCAAA CAGTCTTAGC ACTTGGAAGG CAGAGATCAC
  ACATCTGAGG CTATCCTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377679376	MGP_WTSI_9_56777614	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212775885					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377679376	MGP_WTSI_9_56777614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56837091 () rs orientation: forward

Symbol	Name	Function Class
4930442G15Rik	RIKEN cDNA 4930442G15 gene	1805 bp upstream
Cpgi21803	CpG island 21803	1114 bp distal
Gm70242	predicted gene, 70242	1573 bp downstream
Rr368760	regulatory region 368760	1286 bp downstream
Rr401388	regulatory region 401388	1539 bp downstream
Rr679548	regulatory region 679548	1447 bp distal
Rr679550	regulatory region 679550	1748 bp distal
Rr679551	regulatory region 679551	1590 bp distal
Rr679552	regulatory region 679552	946 bp distal
Rr679553	regulatory region 679553	1403 bp distal
Snx33	sorting nexin 33	1436 bp upstream
Tssr89746	transcription start site region 89746	1812 bp upstream
Tssr89747	transcription start site region 89747	1685 bp upstream
Tssr89748	transcription start site region 89748	1646 bp upstream
Tssr89749	transcription start site region 89749	1493 bp upstream
Tssr89750	transcription start site region 89750	1415 bp upstream