rs212782234 SNP Detail

Summary

• ID
  rs212782234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA CTTAGCATAC ATGAACCCCG
  Y
  CCCACATATT GTATATATAT TTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002881	CHEV_3_142222332	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212782234					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265129 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	658 bp upstream
Rr398085	regulatory region 398085	942 bp upstream
Rr586453	regulatory region 586453	216 bp proximal
Rr586454	regulatory region 586454	1054 bp proximal
Rr586455	regulatory region 586455	1461 bp proximal
Tssr32157	transcription start site region 32157	696 bp upstream
Tssr32158	transcription start site region 32158	740 bp upstream
Tssr32159	transcription start site region 32159	786 bp upstream
Tssr32160	transcription start site region 32160	825 bp upstream
Tssr32161	transcription start site region 32161	983 bp upstream
Tssr32162	transcription start site region 32162	1170 bp upstream
Tssr32163	transcription start site region 32163	1204 bp upstream
Tssr32164	transcription start site region 32164	1237 bp upstream
Tssr32165	transcription start site region 32165	1253 bp upstream
Tssr32166	transcription start site region 32166	1589 bp upstream