rs212787259 SNP Detail

Summary

• ID
  rs212787259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115350868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCATTTCA GATTTTGAAC
  AGGTGAGCCC CTTACCTGCA GTTTCTGACA GGAGGAAGAG TAAGACCCAA CTCTGTTCCA
  TGGTTTGAGT CAGTGTGTGC AGGGACTGTG GAGAGGACAC TGATCATAGG TTGTTTTCAG
  AGTGTGGACA TCCCTGTATT TACTGCCATA GATTCAGTGA ATTTGCATAT TCATGAGCAG
  K
  GTACTTCTTA GGTAAAAATC TAGTCCATCT AGAGAAGAAA TTGTGAGAAA GGACGGAAGA
  TGCACCTGGG TCAGGCAGCA GGATGCTAAA GTCCAAGTCC TAATCCTCTC TGAGGAAGAG
  CATCCCAAAC ACTTTCCCTG AGCCCTGGCC AGGTGTTGTG GATGTAACTT CAGGGACTAA
  GCTCTCAATA AATTTTTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss387457510	MGP_WTSI_12_116625459	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs212787259					SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387457510	MGP_WTSI_12_116625459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115350868 () rs orientation: forward

Symbol	Name	Function Class
Gm19331	predicted gene, 19331	within coordinates
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-62-1	immunoglobulin heavy variable 1-62-1	260 bp upstream