rs212792836 SNP Detail

Summary

• ID
  rs212792836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54495362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACACTCT ACCTGATTCA
  TGTTGCTAGG TGTAGTCAGC CTTGGGGGAC TAAATAAGGC TAAGTAGTAA AGAGCGTCCT
  GGAAAATTGC TTTTTCCTTT AGCCCTGTAA GAAATCCACA AGAGTTCAGA ACTTATTGGC
  CATAGGGTCA GAAGATGCTC CCCTGGGACT TGATTGCCTG TGTGACCTTT GGCAGAGTGG
  Y
  CCAGGCTTTG GTTCAGTCTC TCTCAAGGGA TTAGGGCTTA AGAAGGGGCT CCCGAGGTTA
  ACTCGTGCTG AAGTACCAAA TGGTATTTGG ATTTTTATAG TACTGGGCTT CCTTTCAGGC
  AGGGCTTTGT TTTGTTTGAA GACAGTGTCT CCACTAGTCT AGCTGACGCT ATAGGTAAGG
  CTGACCTGAT CTTCCTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322965095	CHEV_9_54435885	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212792836					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54495362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	933 bp distal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	within coordinates
Rr401372	regulatory region 401372	1630 bp downstream
Rr679159	regulatory region 679159	1557 bp distal
Rr679160	regulatory region 679160	682 bp distal
Tssr85161	transcription start site region 85161	1566 bp downstream
Tssr85162	transcription start site region 85162	1028 bp downstream