rs212793770 SNP Detail

Summary

• ID
  rs212793770
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4746421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTAACG TATTTAGTAG
  GGCAATGGGT GCTGTTTGCA GCATCTCTGG CCCCCAGCCA TGGTTGACCC TGACCTGCAC
  ACCGCCGTTT GGCTCCCAGA ATTTCATGAT CCTGCTTCCG TGTTCGGTAA AACCTAAGGA
  AAAATCAGGT TCGCGCCACC AGGAAATATG CTTTAAAAAA AAAAAAAAAA AAAAAGCGCG
  C
  GGGGGGGGGG GGGCTTCGAT CTTTTAAATG TCACATTTTG GTGGTCTTTT TCTCTCTCAA
  CCAGATCCCA GAAAATGAGA AAAGATGTAC ATCTTTGTGT AAGAGAGAAA GCAGCTGGCC
  AGACATGTCC TTTGGTTCAC ATCTAGGCCA GGGAGTCTCA ATTGTGGGAT AAAACCCCCA
  TCCCCACCCC GAGGGGCAAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss367234325	MGP_WTSI_6_4696421	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs212793770					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367234325	MGP_WTSI_6_4696421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4746421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	370 bp proximal
Peg10	paternally expressed 10	885 bp upstream
Rr146220	regulatory region 146220	within coordinates
Sgce	sarcoglycan, epsilon	within coordinates
Tssr1771	transcription start site region 1771	877 bp upstream
Tssr1772	transcription start site region 1772	1010 bp upstream
Tssr1773	transcription start site region 1773	1021 bp upstream
Tssr54763	transcription start site region 54763	939 bp upstream
Tssr54764	transcription start site region 54764	1189 bp upstream
Tssr59724	transcription start site region 59724	26 bp upstream
Tssr59725	transcription start site region 59725	597 bp downstream
Tssr59726	transcription start site region 59726	624 bp downstream
Tssr59727	transcription start site region 59727	645 bp downstream
Tssr59728	transcription start site region 59728	749 bp downstream