rs212796396 SNP Detail

Summary

• ID
  rs212796396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAATCC ACCTGCTTCT
  GCCTCCGGCA GAATGCTGGG ATTAAAGGCT TGCGCCACCA TACCCAGCCA GTTTAAGTCT
  TAATGCAGCA AGTTTCACTC ATGTCTTGTG CCTAACACTG AGGCAAATTA CCAAATGTTA
  GTAATGTGGG TCATTTGGTA TTGCAGGAAG CAACATGGCA AATTCAGTAA TCAACTAGTA
  Y
  GGGGGCAGGT GATCCACACT AGCAGGTAGG AGGGAAGGGA AAGAAACAAG AAGCCCAAAC
  AGGCAGTTTC CAAGTAATTT TATTCAGAAT TTTGTGTTTG TTTCCTGAAT CAATAAATAC
  TATACAAAAC AATGTAAAAA TGGCTACCAT TTTCTCTCCC CTGCTCCCCT CACCAGGGGA
  CAATTCCCTG GACAACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788496	MGP_WTSI_11_69480377	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212796396					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788496	MGP_WTSI_11_69480377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557701 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	722 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	61 bp downstream
Gm24029	predicted gene, 24029	959 bp downstream
Gm25835	predicted gene, 25835	1977 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	232 bp distal
Tssr102512	transcription start site region 102512	1239 bp downstream
Tssr102513	transcription start site region 102513	1201 bp downstream
Tssr102514	transcription start site region 102514	1171 bp downstream
Tssr102515	transcription start site region 102515	1033 bp downstream
Tssr102516	transcription start site region 102516	382 bp downstream
Tssr102517	transcription start site region 102517	360 bp downstream
Tssr108752	transcription start site region 108752	1945 bp upstream
Tssr108753	transcription start site region 108753	1755 bp upstream
Tssr108754	transcription start site region 108754	1555 bp upstream
Tssr108755	transcription start site region 108755	1510 bp upstream
Tssr108756	transcription start site region 108756	1480 bp upstream
Tssr108757	transcription start site region 108757	1289 bp upstream
Tssr108758	transcription start site region 108758	1050 bp upstream
Tssr108759	transcription start site region 108759	1032 bp upstream
Tssr108760	transcription start site region 108760	970 bp upstream
Tssr108761	transcription start site region 108761	799 bp upstream
Tssr108762	transcription start site region 108762	726 bp upstream
Tssr108763	transcription start site region 108763	706 bp upstream
Tssr108764	transcription start site region 108764	350 bp downstream
Tssr108765	transcription start site region 108765	495 bp downstream