rs212799524 SNP Detail

Summary

• ID
  rs212799524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115151710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCCTGTT TCCGCGTCCG CACGAACCGG
  CTCAGCATCC CGGGAATCCT GCGGTGGGAA GGAGCTGATC TTTGCGATCT GACCCCACTC
  TGATGGAATA GAATACAGGA CATGATCGCC CGGCCCGAGG AATGGTCCCA AAGCGGATAG
  Y
  CATCACACCA GGGGTCATCA CACGCAAAGT CCGGCCAAGG TGCCCTTGAG TCTCTTTCTC
  TGGGCGCACA AATCCGGGCT CATGAACTTT ACAGttcgtc cacacggcca ggtcctcgag
  tcatcgtcca ggtctcagct taaaccggaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484109	CHEV_10_114752861	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212799524					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115151710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	170 bp upstream
Rr402237	regulatory region 402237	40 bp downstream
Rr402238	regulatory region 402238	355 bp upstream
Rr439193	regulatory region 439193	216 bp distal
Rr439194	regulatory region 439194	166 bp distal
Rr439195	regulatory region 439195	within coordinates
Rr439196	regulatory region 439196	1 bp proximal
Rr439197	regulatory region 439197	1725 bp proximal
Rr439198	regulatory region 439198	1866 bp proximal
Tssr95806	transcription start site region 95806	751 bp downstream
Tssr95807	transcription start site region 95807	711 bp downstream
Tssr95808	transcription start site region 95808	135 bp downstream
Tssr95809	transcription start site region 95809	111 bp downstream
Tssr99318	transcription start site region 99318	918 bp upstream
Tssr99319	transcription start site region 99319	875 bp upstream
Tssr99320	transcription start site region 99320	283 bp upstream
Tssr99321	transcription start site region 99321	190 bp upstream
Tssr99322	transcription start site region 99322	181 bp upstream