rs212806272 SNP Detail

Summary

• ID
  rs212806272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85920274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGCTTT GGGGCGTGCA
  CAGAGAAGGG TGTGCGCGAA CATGTTCGCG TGCTGTTGGA AGTGGCTTCG GCGAAGCTTC
  TAGATGTGAG GATTTTTTTT TTCCTTTCCT CGATTGAAGA TGACTTGCGA CTAACTTCAG
  GTAGTGCATT CTTAAGGGAC GAGTATTAGT CCGACTGTCG TCTATGAGTT TTTCCTGCGC
  R
  TTGGCGCTGA GTGAAATCAC CTCTCCCCAT CCCTCAAGCA GCCTCCGCGG CTGAGTGAAA
  GGGCCAGGCC CTGAGATCTG TGTGGCTGGA GTTCTTAATG CTTGCTCCAG AGATCTGATT
  CAAAAGTCCA GGCTGTTTGG TAACCTTGCA GGGTCAGGAA GGAGAAGGAG ATCTTGATAA
  CCACCCCGTA CTCACGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486755	CHEV_17_86012186	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212806272					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85920274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	within coordinates
Cpgi9588	CpG island 9588	758 bp proximal
Cpgi9589	CpG island 9589	1833 bp proximal
Gm55781	predicted gene, 55781	1083 bp downstream
Gm55782	predicted gene, 55782	536 bp upstream
Gm55783	predicted gene, 55783	1816 bp upstream
Rr340290	regulatory region 340290	1873 bp distal
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	762 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	380 bp upstream
Tssr146085	transcription start site region 146085	586 bp upstream
Tssr149705	transcription start site region 149705	469 bp upstream
Tssr149706	transcription start site region 149706	208 bp downstream
Tssr149707	transcription start site region 149707	1956 bp downstream