rs212809603 SNP Detail

Summary

• ID
  rs212809603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69493433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCCCCC ACACTCACCT
  TGCCAACACA AGTGACATTC ATGCTCTGGT TTGCCCCTGC ATAGAAGTTG ATGACCTAGA
  GAAAGGAGGG AGGGTGGATT TAGAAGAAGT TGCCACATCT TGGCGTCTAG CCTTTCAGCT
  CTGGGGCTTA GCTTCCAATA GCCCCACCTC TTAAAACAAA CTACCAAAAA TCTCTTTAAT
  R
  CCCATTAACC CCAATGAAAG GACACATTAG TAAACAGATG GTGGCCCCAG CTCCCTCCTC
  CATCCTCCCC GGGAGACCAA TATCATGGGT ACCCGATTCA TTTTGATGAA GACACAGGGC
  TGCCCGGTGC TGTAACCATA GTGGGTAGGG TCCCCAATGC CAGAGCAATC GCCCAGTTGG
  GTCCGGTTGA ACTGGCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787337	MGP_WTSI_11_69416109	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212809603					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787337	MGP_WTSI_11_69416109	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69493433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr386229	regulatory region 386229			1151 bp downstream
Rr450035	regulatory region 450035			1945 bp distal
Rr450036	regulatory region 450036			1748 bp proximal
Tssr3544	transcription start site region 3544			1903 bp upstream
Tssr102488	transcription start site region 102488			1404 bp downstream
Tssr102489	transcription start site region 102489			1358 bp downstream
Tssr108718	transcription start site region 108718			1954 bp upstream
Tssr108719	transcription start site region 108719			1952 bp upstream
Tssr108720	transcription start site region 108720			1936 bp upstream
Tssr108721	transcription start site region 108721			1927 bp upstream
Tssr108722	transcription start site region 108722			1849 bp upstream
Tssr108723	transcription start site region 108723			1812 bp upstream
Tssr108724	transcription start site region 108724			1766 bp upstream
Tssr108725	transcription start site region 108725			1744 bp upstream
Tssr108726	transcription start site region 108726			1642 bp upstream
Tssr108727	transcription start site region 108727			1621 bp upstream
Tssr108728	transcription start site region 108728			1577 bp upstream
Tssr108729	transcription start site region 108729			1492 bp upstream
Tssr108730	transcription start site region 108730			1460 bp upstream
Tssr108731	transcription start site region 108731			1418 bp upstream
Tssr108732	transcription start site region 108732			1357 bp upstream
Tssr108733	transcription start site region 108733			142 bp upstream
Tssr108734	transcription start site region 108734			136 bp downstream
Tssr108735	transcription start site region 108735			203 bp downstream
Tssr108736	transcription start site region 108736			241 bp downstream
Tssr108737	transcription start site region 108737			931 bp downstream