rs212810364 SNP Detail

Summary

• ID
  rs212810364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40056664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGACCAG AAGTTTACTT
  AAGATCGAGT TGAGTTTTCA GTGTAAATCA AAGCAAGTAC ACTTTATTTT CATTTCATTG
  TATGAGGTTC AAAAGAAGAT GCCCAAAATT CACATCCTGT CTCTTTTCTT GATCACGAGC
  ACAGCATGCT GACACACCAC AGATAAGCAA CAGGACTCTT CAATGGTGCC TCTCAGCGTT
  Y
  ACTTACACGG TCCCCTTGCT TGATTGAAAC ACCCTTTCTA GTTAGCATGG CAACAGAACA
  TAGCATTTTC ACTTTTCATT ATACCCTATA AAAGATGGGA TAATTGATGC TTCTGAACAG
  GGCATTCAGC ATCTATTTTT ATCTAAAGAG AAAAACAGAG CCTTCTTCTC TAATTTGGAA
  AGTTCAGGTT AATATTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370404	MGP_WTSI_8_40688977	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212810364					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370404	MGP_WTSI_8_40688977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40056664 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	1844 bp downstream
Tssr80996	transcription start site region 80996	914 bp downstream
Tssr80997	transcription start site region 80997	963 bp downstream
Tssr80998	transcription start site region 80998	1337 bp downstream
Tssr80999	transcription start site region 80999	1401 bp downstream
Tssr81000	transcription start site region 81000	1596 bp downstream
Tssr81001	transcription start site region 81001	1652 bp downstream
Tssr81002	transcription start site region 81002	1666 bp downstream
Tssr81003	transcription start site region 81003	1688 bp downstream
Tssr81004	transcription start site region 81004	1748 bp downstream
Tssr81005	transcription start site region 81005	1769 bp downstream
Tssr81006	transcription start site region 81006	1806 bp downstream
Tssr81007	transcription start site region 81007	1871 bp downstream
Tssr81008	transcription start site region 81008	1981 bp downstream
Tssr81009	transcription start site region 81009	1997 bp downstream