rs212811692 SNP Detail

Summary

• ID
  rs212811692
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108900888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTTCAT AATTGCTCAA
  TAATCTTCTA GGTGTCTATT CTGATATAAT GCCATACAAA ATCTAGCTAT TCATGCCATA
  TTATTTGGGA AAATAAAATA TCAATAACCT TTCTTGTTAA CTATTTTAAG CAAGTTTGGG
  TTCAGATCCT AATCTCAACC CTTGATATGT ATAGAAAGGG CTTATATGCC TGCAACAGAG
  M
  CAAGTGAGGA TATATATATA TATATATATA TATATATATA TATATATATA TATATTGTTT
  TTTTCGAGAC AAGGTTTCTC TGTATAGCCC TGGCTATCCT GGAACTCACT CTGTAGACCA
  GGCTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTTC CAAGTGCTGG GATTAAAGGC
  GTGAGCCACC ACTGCCCGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384648952	MGP_WTSI_11_108871376	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212811692					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384648952	MGP_WTSI_11_108871376	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108900888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	1580 bp proximal
Gm11668	predicted gene 11668	1281 bp downstream
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	1653 bp upstream
Tssr105628	transcription start site region 105628	1753 bp upstream
Tssr105629	transcription start site region 105629	1769 bp upstream
Tssr105630	transcription start site region 105630	1807 bp upstream
Tssr105631	transcription start site region 105631	1924 bp upstream
Tssr111515	transcription start site region 111515	1643 bp downstream
Tssr111516	transcription start site region 111516	1709 bp downstream
Tssr111517	transcription start site region 111517	1778 bp downstream
Tssr111518	transcription start site region 111518	1798 bp downstream
Tssr111519	transcription start site region 111519	1811 bp downstream
Tssr111520	transcription start site region 111520	1841 bp downstream
Tssr111521	transcription start site region 111521	1926 bp downstream