rs212818695 SNP Detail

Summary

• ID
  rs212818695
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120239525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGCCTCC CCCGCCGCTA
  TTTAAGCGGG AGCGGGCCGC GCGCGCGGGC GGGGGCGCGC GCGGCCCCAG AACATGTCCA
  TATATGGCGA TCTTTCCAAA AGCCGGGCGC CTATTGGCCC GCCCGCCAGG GACACGTGGG
  GCCCGGGCCC GCCCGCCCCT GGCCCGCGCC GCCGCCAACG GCCCCGCCCG CGCCGCCCCC
  S
  CGCGCTCGCG ACCCCGGGAG GCCCGGTTCT TGCTCGCGGG GGTCTCGGCG AGTGGCGTGC
  GTGCGATCGG CCCTGCCCTG CCCCGGGACT GCCGCGTAGC AGGGAGGGCC CGGGCTGCGC
  CCCGAAACTG CCAAGCCCGG GGCGGGCCGC GCCCCGATCT GGGGTGAGTC CCGTGGCCCC
  CGCCCCTATG TGAATCCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384941864	MGP_WTSI_11_120210013	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212818695					SNP	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941864	MGP_WTSI_11_120210013	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120239525 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	within coordinates
Actg1	actin, gamma, cytoplasmic 1	204 bp upstream
Cpgi4301	CpG island 4301	within coordinates
Gm55891	predicted gene, 55891	1880 bp upstream
Gm72337	predicted gene, 72337	102 bp downstream
Mir6935	microRNA 6935	1286 bp upstream
Tssr3756	transcription start site region 3756	579 bp upstream
Tssr3757	transcription start site region 3757	1572 bp upstream
Tssr106280	transcription start site region 106280	within coordinates
Tssr112287	transcription start site region 112287	1240 bp upstream
Tssr112288	transcription start site region 112288	510 bp upstream
Tssr112289	transcription start site region 112289	454 bp upstream
Tssr112290	transcription start site region 112290	191 bp upstream
Tssr112291	transcription start site region 112291	140 bp upstream
Tssr112292	transcription start site region 112292	52 bp downstream
Tssr112293	transcription start site region 112293	715 bp downstream
Tssr112294	transcription start site region 112294	1145 bp downstream