rs212820828 SNP Detail

Summary

• ID
  rs212820828
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93018138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTA GCCTCACACT TCACCGCCGT
  W
  GCCACCGCGC TGGCCGCTGC CTGCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395088	CHEV_2_93027950	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212820828					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93018138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11943	CpG island 11943			within coordinates
Rr561108	regulatory region 561108			1245 bp distal
Rr561109	regulatory region 561109			199 bp distal
Rr561110	regulatory region 561110			355 bp distal
Rr561111	regulatory region 561111			within coordinates
Rr561112	regulatory region 561112			1173 bp proximal
Rr561113	regulatory region 561113			1389 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
Tssr18978	transcription start site region 18978			985 bp downstream
Tssr18979	transcription start site region 18979			240 bp downstream
Tssr18980	transcription start site region 18980			223 bp downstream
Tssr18981	transcription start site region 18981			152 bp downstream
Tssr18982	transcription start site region 18982			10 bp downstream