rs212821147 SNP Detail

Summary

• ID
  rs212821147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94880491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTGTGC TAGTTATAGG
  GTGACTCTCT ACAGAGGCCC GGCAGTCACT GCAGTACCAT GGATGCTGAG TCAGACCTGA
  TGTGGCAGTA TGAAGGGAGA GCCACCTGTC CTGGGCAAAG CCTGATGACT GTCCAGCCTC
  CCATACTGCT TTCCTCTGCC CTTTGATGGA GACAGATGCC GACATCAGAC TGGGCACATA
  Y
  GTGCGCCCGC GCACACACAC ACACATTTTA TCTACAGGCT GCTGCTCCTG CTGCCCTGCC
  GGATGTGAGA AGTGTGCCAA GGACTGTGTG TGCAAAGGTG AAGAGGGGGC CAAGGCAGAG
  GCCGAGAAAT GCAGCTGCTG CCAGTGAGGA CCCAGACCCT CCCACACAGC CTATGTAAAT
  AGTGCTGGGT GTCCCTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375635817	MGP_WTSI_8_96677763	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212821147					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375635817	MGP_WTSI_8_96677763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94880491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20837	CpG island 20837	937 bp distal
D8Jpk2	DNA segment, Chr 8, Japan, Kominami 2	1818 bp proximal
Mt3	metallothionein 3	within coordinates
Rr187118	regulatory region 187118	within coordinates
Tssr78818	transcription start site region 78818	1112 bp downstream
Tssr78819	transcription start site region 78819	859 bp downstream
Tssr78820	transcription start site region 78820	830 bp downstream
Tssr78821	transcription start site region 78821	32 bp upstream
Tssr82483	transcription start site region 82483	88 bp downstream
Tssr82484	transcription start site region 82484	143 bp downstream
Tssr82485	transcription start site region 82485	281 bp downstream