rs212821276 SNP Detail

Summary

• ID
  rs212821276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76302917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctctccacg gagccctggc tgtcctgcaa
  cttactctgt agaccatgct gatcttgaac tcacagagat cccctcctgc ctctgcctcc
  tgagtgctgg gattaatggc ttgggctacc acacctggcC TAGAGGGTTT CCTCTAATTC
  R
  GCGCATTCCT CATTACACCA AATGCTGTCT TTTTTTCTCT TTCACCCCGC CGGCTTCACT
  TCCAAGGTAT CGCACAGGCA AGGCAAGCGC CGCACCACTC AGCTACTACG CCAGCGCTCG
  CTTGCTCTAC CCTTTAACAG CCTACCTATC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104769	CHEV_12_77357130	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212821276					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76302917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	476 bp distal
Gm47525	predicted gene, 47525	406 bp upstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	within coordinates
Rr403350	regulatory region 403350	797 bp downstream
Rr468112	regulatory region 468112	720 bp distal
Rr468113	regulatory region 468113	within coordinates
Tssr113934	transcription start site region 113934	904 bp downstream
Tssr113935	transcription start site region 113935	886 bp downstream
Tssr113936	transcription start site region 113936	836 bp downstream
Tssr113937	transcription start site region 113937	806 bp downstream
Tssr113938	transcription start site region 113938	774 bp downstream
Tssr113939	transcription start site region 113939	707 bp downstream
Tssr113940	transcription start site region 113940	671 bp downstream
Tssr113941	transcription start site region 113941	649 bp downstream
Tssr116711	transcription start site region 116711	1086 bp upstream
Tssr116712	transcription start site region 116712	1033 bp upstream