rs212825921 SNP Detail

Summary

• ID
  rs212825921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24561039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGATATT AAGTAAAAGT
  GATTGTTGAT TTCTGTTATT AAATATGGAA CTATGTTTGT GTTGTTTTCT TCTTTTGGGT
  TTGTTGAAAG AAGATGACTT TGCTCTCCCT AGGGTTTCCC TTCGTGTGTT GGAGTTTTCC
  ATCTCTTATT CTTTGTAGAG CTGTAGTTCT GGAACGATAT TGCATAAATT TGTTTTTGTC
  R
  TGGAGTATAT TAGTTTCTCC ATCTATGTTA ATTGAGAGTT TTGTTGGGTG TAGTATTTGT
  GTTCTTTTAG GGTCTGTATG ACATCTGCCC AGCATCTTCT GGCTTTTATT ATCTCTGGTG
  TGATGTCTGG TTAATTCTAA TTGGTGTGCC TCTTTACTTA CTTGACATTT TTACCTTACC
  ACTTTTAATA TTCTTTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295915	CHEV_13_24468925	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212825921					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24561039 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	1106 bp upstream
Rr476038	regulatory region 476038	1995 bp distal
Rr476039	regulatory region 476039	1117 bp distal
Rr476040	regulatory region 476040	963 bp distal
Tssr4016	transcription start site region 4016	995 bp downstream
Tssr118892	transcription start site region 118892	1011 bp downstream
Tssr118893	transcription start site region 118893	947 bp downstream
Tssr118894	transcription start site region 118894	911 bp downstream
Tssr118895	transcription start site region 118895	859 bp downstream
Tssr121784	transcription start site region 121784	1097 bp upstream
Tssr121785	transcription start site region 121785	1084 bp upstream
Tssr121786	transcription start site region 121786	1023 bp upstream