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rs212829587 SNP Detail
Summary
  • ID
    rs212829587
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:149979413 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCCATGTTT TGTAACATTT
TAGGGCACCA GACAAGCACA TGACATACAT ACATACATAC ATACATAGAG GCAAATTCTC
ATACATATAA AAATAAAATA AATCTTAAGA AAATCACGTG GTGAATTTTA AAGACAACTA
AATCATCAAT ATTGAATAAG AAATTATAGT AAAAAATCAG TAAATTGAAC TTTCTCCATA
M
TTAATTTTCT AGGTGGACTT AAATCACATT TATGGTGAAA CTCTGGACAG ACAACATAAA
CTGCGCCTTT TCAAGGATGG AAAATTGAAA TATCAGGTAT TTTCCTTATG GTTTAAAAAT
GACCATCTGT CATTTAGACT TACATATTAA AACTATTGTG GCTTTTTTTT CCTTCTTTTA
ACTCTGTTAT TATTGTTGTG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888747 MGP_WTSI_1_151950792 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212829587 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888747 MGP_WTSI_1_151950792 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149979413 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 588 bp proximal
Rr24983 regulatory region 24983 620 bp proximal
Tssr242 transcription start site region 242 857 bp downstream
Tssr9230 transcription start site region 9230 1549 bp downstream
Tssr9231 transcription start site region 9231 1516 bp downstream
Tssr9232 transcription start site region 9232 1473 bp downstream
Tssr9233 transcription start site region 9233 1017 bp downstream
Tssr9234 transcription start site region 9234 988 bp downstream
Tssr9235 transcription start site region 9235 957 bp downstream
Tssr9236 transcription start site region 9236 932 bp downstream
Tssr9237 transcription start site region 9237 900 bp downstream
Tssr9238 transcription start site region 9238 869 bp downstream
Tssr9239 transcription start site region 9239 835 bp downstream
Tssr9240 transcription start site region 9240 821 bp downstream
Tssr9241 transcription start site region 9241 791 bp downstream
Tssr9242 transcription start site region 9242 775 bp downstream
Tssr9243 transcription start site region 9243 648 bp downstream
Tssr9244 transcription start site region 9244 597 bp downstream
Tssr9245 transcription start site region 9245 561 bp downstream
Tssr9246 transcription start site region 9246 542 bp downstream
Tssr9247 transcription start site region 9247 407 bp downstream
Tssr9248 transcription start site region 9248 3 bp upstream
Tssr9249 transcription start site region 9249 30 bp upstream
Tssr9250 transcription start site region 9250 198 bp upstream
Tssr9251 transcription start site region 9251 244 bp upstream
Tssr9252 transcription start site region 9252 299 bp upstream
Tssr9253 transcription start site region 9253 329 bp upstream
Tssr9254 transcription start site region 9254 356 bp upstream
Tssr9255 transcription start site region 9255 375 bp upstream
Tssr9256 transcription start site region 9256 615 bp upstream
Tssr9257 transcription start site region 9257 639 bp upstream
Tssr9258 transcription start site region 9258 662 bp upstream
Tssr9259 transcription start site region 9259 687 bp upstream
Tssr9260 transcription start site region 9260 742 bp upstream
Tssr9261 transcription start site region 9261 797 bp upstream
Tssr9262 transcription start site region 9262 805 bp upstream
Tssr9263 transcription start site region 9263 827 bp upstream
Tssr9264 transcription start site region 9264 872 bp upstream
Tssr9265 transcription start site region 9265 903 bp upstream
Tssr9266 transcription start site region 9266 992 bp upstream
Tssr9267 transcription start site region 9267 1283 bp upstream
Tssr9268 transcription start site region 9268 1339 bp upstream
Tssr9269 transcription start site region 9269 1722 bp upstream
Tssr9270 transcription start site region 9270 1762 bp upstream
Tssr9271 transcription start site region 9271 1786 bp upstream
Tssr9272 transcription start site region 9272 1816 bp upstream
Tssr9273 transcription start site region 9273 1868 bp upstream
Tssr9274 transcription start site region 9274 1886 bp upstream
Tssr9275 transcription start site region 9275 1913 bp upstream
Tssr9276 transcription start site region 9276 1928 bp upstream
Tssr9277 transcription start site region 9277 1978 bp upstream
Tssr9278 transcription start site region 9278 1999 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory