rs212830169 SNP Detail

Summary

• ID
  rs212830169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62495303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCGTCTA CAGTAGTGAG
  CCAGGGCTAC AAAGAAATCC AAAAGAGAAA AGCCAGGGTG GGAGGGCAGC CATTGATTTT
  GCAAGGCTGT TATATATAAT GTCCTGTTTT CTGCAATCCA TTTTAGGGTG TCCCCTTTCA
  AGTTCTCAGA ACGGACGCAG GACTGCAGAT CTGTGCTGGC AGCAGCAGAG GTGAGTTGGT
  Y
  TGTACAGTGA CTATCTGTTA TTACTCTGAG AGATATCAAA TGATGATATC ACCTAAAATA
  GCTGGAATTA CCGGCAGATT GGTAGTGGTG AGCCTATGGT TTTCTGAAGA TATCATTAAA
  TGTTCTAAAT GCCATTGATC CAGGCAGGAG TGATTCTGAA ATTCAGCTCT TTTGCAGGCT
  ATATTCCCAG AGGAGTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383610566	MGP_WTSI_11_62417979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212830169					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383610566	MGP_WTSI_11_62417979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62495303 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	within coordinates
Cpgi3027	CpG island 3027	974 bp distal
Lrrc75a	leucine rich repeat containing 75A	407 bp downstream
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	1253 bp upstream
Rr235283	regulatory region 235283	1898 bp proximal
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	1589 bp downstream
Snord49a	small nucleolar RNA, C/D box 49A	956 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	1329 bp downstream
Snord65	small nucleolar RNA, C/D box 65	53 bp upstream
Tssr102048	transcription start site region 102048	1591 bp downstream
Tssr102049	transcription start site region 102049	1486 bp downstream
Tssr102050	transcription start site region 102050	1399 bp downstream
Tssr102051	transcription start site region 102051	1311 bp downstream
Tssr102052	transcription start site region 102052	1285 bp downstream
Tssr102053	transcription start site region 102053	1020 bp downstream
Tssr102054	transcription start site region 102054	1251 bp upstream