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rs212842055 SNP Detail
Summary
  • ID
    rs212842055
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:25421048 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTTCCCTT CACCCTCTCA
    CCCGCTTATG CCCACCAGAA ACTACCACGA CTCCTGGAGT AAAAGGTTTC AAGTTCAATA
    GTCACACTCT CTCCAAGTAC AAAAAGCAGT TACAATCCAA CTGAACAGAC GCTTGTGTGC
    AAAGTTACGG GGAACTGAGA CATCATATAA AAAGTTAGGT TAAAGGTGAT TTTGTTGTTT
    Y
    GAGGGTGTGG CTCTTCCTCG GTTACCTGAA CTCAGCAAAG AAATGGTTAT TTGATGAAGT
    ATCAACGGCT GACCCACAGT AAAAACAGAC AAATTCTAAA AATTAAAAAA AAAAAAAAAA
    AAGCATAATT ACCAAAAAAA GTCAATGCTT CCTCCCTCTG CAATTTGCTT CTTAAACTTT
    TTTTTTTTTT AAAGTTTTTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370810398 MGP_WTSI_7_26506642 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212842055 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss370810398 MGP_WTSI_7_26506642 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:25421048 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hnrnpul1 heterogeneous nuclear ribonucleoprotein U-like 1 within coordinates
Rr155556 regulatory region 155556 1048 bp distal
Rr155557 regulatory region 155557 1753 bp proximal
Rr160908 regulatory region 160908 1353 bp proximal
Rr167290 regulatory region 167290 1847 bp distal
Rr170211 regulatory region 170211 34 bp proximal
Tssr65169 transcription start site region 65169 1262 bp upstream
Tssr71293 transcription start site region 71293 95 bp downstream
Tssr71294 transcription start site region 71294 1233 bp downstream
Tssr71295 transcription start site region 71295 1302 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory