rs212846543 SNP Detail

Summary

• ID
  rs212846543
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGATCAGGG AGAGGAGAGG GCAGAACTGC
  TGGAGGAACC AGAAGTCAAA GCCACCAAGA TACTGGCTAT GGTGACAGAA GTGTGAAGAG
  ATGAAAGGAA AGTGGCTAGA ACCTTGTAAA AGGAAGAAGG ACAGTGTTCA CCCCTGGGAA
  K
  CAAGTGGCTG AAACGGGTTC GAGGGATCTG TGGGGTAGAG GCTGGGTGGA TGAGACCATT
  TCCTGTACCT CTAAGGGGAT GGGAGTAGAA ACTGAAACAG GAGCTGTAAG GGCATCTCAT
  TCATAAACTC AAACTAGAAA ACCTCCAACA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730635	CHEV_11_69414302	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212846543					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491626 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	1061 bp distal
Rr450034	regulatory region 450034	1190 bp distal
Rr450035	regulatory region 450035	138 bp distal
Tssr3544	transcription start site region 3544	96 bp upstream
Tssr102487	transcription start site region 102487	760 bp downstream
Tssr102488	transcription start site region 102488	363 bp upstream
Tssr102489	transcription start site region 102489	438 bp upstream
Tssr108712	transcription start site region 108712	782 bp upstream
Tssr108713	transcription start site region 108713	631 bp upstream
Tssr108714	transcription start site region 108714	563 bp upstream
Tssr108715	transcription start site region 108715	529 bp upstream
Tssr108716	transcription start site region 108716	225 bp upstream
Tssr108717	transcription start site region 108717	211 bp upstream
Tssr108718	transcription start site region 108718	147 bp upstream
Tssr108719	transcription start site region 108719	145 bp upstream
Tssr108720	transcription start site region 108720	129 bp upstream
Tssr108721	transcription start site region 108721	120 bp upstream
Tssr108722	transcription start site region 108722	42 bp upstream
Tssr108723	transcription start site region 108723	5 bp upstream
Tssr108724	transcription start site region 108724	34 bp downstream
Tssr108725	transcription start site region 108725	58 bp downstream
Tssr108726	transcription start site region 108726	153 bp downstream
Tssr108727	transcription start site region 108727	175 bp downstream
Tssr108728	transcription start site region 108728	219 bp downstream
Tssr108729	transcription start site region 108729	306 bp downstream
Tssr108730	transcription start site region 108730	338 bp downstream
Tssr108731	transcription start site region 108731	369 bp downstream
Tssr108732	transcription start site region 108732	430 bp downstream
Tssr108733	transcription start site region 108733	1652 bp downstream
Tssr108734	transcription start site region 108734	1943 bp downstream