rs212867768 SNP Detail

Summary

• ID
  rs212867768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89532249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTTGGCA TTGCTGAGTG CAGTATGTGT
  TATACACCAC AGCCTTGAGG CCAGACAATG TGTGAACTTG GGCAAGTATT GGCCTCCAGG
  GTAGTTGTAA CATGGGCGGC TGGTATGACC CTGCTTAGGT GGTCCCTCTA CCAAAAATGA
  Y
  ATCTAGGGAA TGTTTTGACT TCTGTGAGTT CTGTGGCATG TCTCCTCACG TTTCCCATCC
  TCTATTACAG ATGCTTTCGT GAACAGCCAG GAATGGACAC TCAGCCGATC GGTACCGGAG
  CTCAAAGTGG TGAGTGGCAT CTCTGGCCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319834405	CHEV_1_91501102	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212867768					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89532249 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr18178	regulatory region 18178	1952 bp proximal
Rr23524	regulatory region 23524	152 bp proximal
Rr35151	regulatory region 35151	50 bp distal
Tssr8003	transcription start site region 8003	1267 bp downstream