rs212877330 SNP Detail

Summary

• ID
  rs212877330
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30823944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCTGTC TCAAAAAACC
  AAAAACCAAA ACCAAAACCA AAACCAAAAA AAAAAAAAAG CTTCTACTCT TTGATTTTGC
  TCTATGGCTG TCCAAGACAT TTTTGCTGGT GCCAAGTAAT TCCAGTGACA TTTTTTGACA
  TTTTCCCCCC TACCAGCCAT AATGCCAGCT GCATCAACTC ATTCAGCCCT CACACAGACC
  W
  AGGGAGTTGA AGCCAGCGAG ATGGCTTAGC AAGTGAAGGT GCTTGCCACC ACTCTGGCAG
  CCTGGCTTCG ATCCTTAGGA CCCGTGTGGT GAAATGACAG AATGGACTTC TTCAACTTGT
  CTTCTAACCT CCATACACAC GCCATGGCAT GTACACACAC ACACATACTC TAAAAATAAA
  TGTAGTGACC TAAAATTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139518	CHEV_7_31909538	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212877330					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30823944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	597 bp proximal
Cpgi18837	CpG island 18837	1675 bp proximal
Rr645025	regulatory region 645025	1337 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	Intron