rs212880415 SNP Detail

Summary

• ID
  rs212880415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121993319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTTCA GATTCATGAG
  AGAGTCTGGT TTGCATAGTC ATCTTTTGCA TTAGGCGACA GTTGGGGTTG CTGGACAGCC
  TATGAAATGG TCCAGAAGTC TGTCTGTGGT CTGGGAAAGG AAAAGGAAGT CACCTGACAT
  ATGCAGACCT GATCCTTTAG TGTGGACAGT GGGGAAGGCA GTTATTTTAA ATTAACACAT
  Y
  CAGTAGACAT TGAATAGAAA TCTTAATTTA AAAAGTCAAG TATGCAAAGA ATAACATATA
  GAATTGTTTA TAACTATTCT GTATATAAAT ATTGACCTCG AGTCTCCCTT CTGATGGGCT
  CAAAGAAACT CAATTTATAC TCTTTGAGAA GTGGCACCCA CAGAGAGTGT GATTATACAC
  ACATATATGA GTACTCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355480967	MGP_WTSI_2_121988574	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212880415					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480967	MGP_WTSI_2_121988574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121993319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			211 bp downstream
Rr563918	regulatory region 563918			1828 bp distal
Rr563919	regulatory region 563919			1960 bp distal
Rr563920	regulatory region 563920			927 bp distal
Rr563921	regulatory region 563921			742 bp proximal
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant
Tssr19832	transcription start site region 19832			1279 bp downstream